1,137
edits
Changes
→PET-1 Promoter
=PET-1 Promoter=
=PET-1 Promoter=
According to TESS (reference below)
There are the following potential RAR sites in the mouse PET-1 promoter:
''(Note: substract from 2000 to get upstream position)''
:RAR-alpha at 1061-1069 (La/Len = 1.53)
:RAR-beta at 599-604 (1.69)
:RAR-beta at 1596-1604 (1.71)
:RAR-beta at 1926-1931 (1.71)
:RXR-alpha/RXR-beta at 1595-1601 (2.0)
:RXR-alpha/RXR-beta at 1926-1931 (2.0)
Hi probability of ER-alpha binding (all La/Len = 1.9 - 2.0) at:
:599-603
:1065-1069
:1597-1601
:1867-1871
:1926-1030
ER/SP-1 binding (all La/Len = 2.0) at:
:990-994
:1243-1247
Found transcription factor binding sites using TESS:
BLAST of mus FEV mRNA ( NM_153111) leads to 100% homology with mus chromosome 1 (AC104542.10) bases 38140 to 40385
BLAST of mus FEV mRNA ( NM_153111) leads to 100% homology with mus chromosome 1 (AC104542.10) bases 38140 to 40385
Searched using TESS: Combined search query and defaults
Searched using TESS: Combined search query and defaults
Schug, Jonathan, Using TESS to Predict Transcription Factor Binding Sites in DNA Sequence, Wiley’s Current Protocols in Bioinformatics, ed. Baxevanis, A. D. J. Wiley & sons, 2003. Chapter 5
TESS: Transcription Element Search Software on the WWW',
TESS: Transcription Element Search Software on the WWW,
Jonathan Schug and G. Christian Overton,
Jonathan Schug and G. Christian Overton,
Technical Report CBIL-TR-1997-1001-v0.0
Technical Report CBIL-TR-1997-1001-v0.0
URL: http://www.cbil.upenn.edu/tess
URL: http://www.cbil.upenn.edu/tess